HL_1VQN_067

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQN_067 not in the Motif Atlas

Homologous match to HL_4V9F_067

Geometric discrepancy: 0.0553

The information below is about HL_4V9F_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_12125.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

1VQN|1|0|C|2737
1VQN|1|0|G|2738
1VQN|1|0|A|2739
1VQN|1|0|G|2740
1VQN|1|0|A|2741
1VQN|1|0|G|2742

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain P

50S ribosomal protein L19E

Chain X

50S ribosomal protein L31e