HL_1VQO_002
3D structure
- PDB id
- 1VQO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.2 Å
Loop
- Sequence
- CGCACGGAG
- Length
- 9 nucleotides
- Bulged bases
- 1VQO|1|0|C|87
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VQO_002 not in the Motif Atlas
- Homologous match to HL_4V9F_002
- Geometric discrepancy: 0.1091
- The information below is about HL_4V9F_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
1VQO|1|0|C|83
1VQO|1|0|G|84
1VQO|1|0|C|85
1VQO|1|0|A|86
1VQO|1|0|C|87
1VQO|1|0|G|88
1VQO|1|0|G|89
1VQO|1|0|A|90
1VQO|1|0|G|91
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 2
- 50S ribosomal protein L39e
- Chain T
- 50S ribosomal protein L24P
- Chain V
- 50S ribosomal protein L29P
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