3D structure

PDB id
1VQO (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.2 Å

Loop

Sequence
GGAACAAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1VQO_029 not in the Motif Atlas
Homologous match to HL_4V9F_029
Geometric discrepancy: 0.0697
The information below is about HL_4V9F_029
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_42998.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

1VQO|1|0|G|1076
1VQO|1|0|G|1077
1VQO|1|0|A|1078
1VQO|1|0|A|1079
1VQO|1|0|C|1080
1VQO|1|0|A|1081
1VQO|1|0|A|1082
1VQO|1|0|C|1083

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain 9
5S ribosomal RNA; 5S rRNA
Chain W
50S ribosomal protein L30P
Chain Y
50S ribosomal protein L32E

Coloring options:


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