HL_1VQO_035

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

GCUGAUC

Length

7 nucleotides

Bulged bases

1VQO|1|0|C|1431, 1VQO|1|0|U|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQO_035 not in the Motif Atlas

Homologous match to HL_4V9F_035

Geometric discrepancy: 0.0662

The information below is about HL_4V9F_035

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

1VQO|1|0|G|1430
1VQO|1|0|C|1431
1VQO|1|0|U|1432
1VQO|1|0|G|1433
1VQO|1|0|A|1434
1VQO|1|0|U|1435
1VQO|1|0|C|1436

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 2

50S ribosomal protein L39e

Chain P

50S ribosomal protein L19E

Chain R

50S ribosomal protein L22P