HL_1VQO_055

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

1VQO|1|0|G|2283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQO_055 not in the Motif Atlas

Homologous match to HL_4V9F_055

Geometric discrepancy: 0.063

The information below is about HL_4V9F_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

1VQO|1|0|C|2281
1VQO|1|0|U|2282
1VQO|1|0|G|2283
1VQO|1|0|G|2284
1VQO|1|0|G|2285
1VQO|1|0|G|2286
1VQO|1|0|C|2287
1VQO|1|0|G|2288
1VQO|1|0|G|2289

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain H

50S RIBOSOMAL PROTEIN L10E