3D structure

PDB id
1VQO (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.2 Å

Loop

Sequence
GCUUGAUGC
Length
9 nucleotides
Bulged bases
1VQO|1|0|C|2443
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1VQO_061 not in the Motif Atlas
Homologous match to HL_4V9F_061
Geometric discrepancy: 0.0673
The information below is about HL_4V9F_061
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_93324.3
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
26

Unit IDs

1VQO|1|0|G|2442
1VQO|1|0|C|2443
1VQO|1|0|U|2444
1VQO|1|0|U|2445
1VQO|1|0|G|2446
1VQO|1|0|A|2447
1VQO|1|0|U|2448
1VQO|1|0|G|2449
1VQO|1|0|C|2450

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain 3
50S ribosomal protein L44E
Chain L
50S ribosomal protein L15P
Chain M
50S Ribosomal Protein L15E

Coloring options:


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