HL_1VQO_062

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

AGCACAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQO_062 not in the Motif Atlas

Homologous match to HL_4V9F_062

Geometric discrepancy: 0.1604

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

1VQO|1|0|A|2506
1VQO|1|0|G|2507
1VQO|1|0|C|2508
1VQO|1|0|A|2509
1VQO|1|0|C|2510
1VQO|1|0|A|2511
1VQO|1|0|U|2512
1VQO|1|0|A|2513
1VQO|1|0|U|2514

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain H

50S RIBOSOMAL PROTEIN L10E