HL_1VQP_007

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

CGCAAUG

Length

7 nucleotides

Bulged bases

1VQP|1|0|C|197, 1VQP|1|0|U|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQP_007 not in the Motif Atlas

Homologous match to HL_4V9F_007

Geometric discrepancy: 0.0399

The information below is about HL_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

1VQP|1|0|C|195
1VQP|1|0|G|196
1VQP|1|0|C|197
1VQP|1|0|A|198
1VQP|1|0|A|199
1VQP|1|0|U|200
1VQP|1|0|G|201

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain L

50S ribosomal protein L15P

Chain M

50S Ribosomal Protein L15E