HL_1VQP_042

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

1VQP|1|0|A|1691, 1VQP|1|0|A|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQP_042 not in the Motif Atlas

Homologous match to HL_4V9F_042

Geometric discrepancy: 0.0593

The information below is about HL_4V9F_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

1VQP|1|0|C|1687
1VQP|1|0|G|1688
1VQP|1|0|A|1689
1VQP|1|0|C|1690
1VQP|1|0|A|1691
1VQP|1|0|C|1692
1VQP|1|0|A|1693
1VQP|1|0|G|1694

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain 2

50S ribosomal protein L39e

Chain R

50S ribosomal protein L22P