HL_1VQP_051

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

CAUCAGUAG

Length

9 nucleotides

Bulged bases

1VQP|1|0|U|1996

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQP_051 not in the Motif Atlas

Homologous match to HL_4V9F_051

Geometric discrepancy: 0.0436

The information below is about HL_4V9F_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

1VQP|1|0|C|1990
1VQP|1|0|A|1991
1VQP|1|0|U|1992
1VQP|1|0|C|1993
1VQP|1|0|A|1994
1VQP|1|0|G|1995
1VQP|1|0|U|1996
1VQP|1|0|A|1997
1VQP|1|0|G|1998

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain K

50S ribosomal protein L14P