HL_1VQP_074

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

U(OMU)(OMG)UUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQP_074 not in the Motif Atlas

Homologous match to HL_4V9F_073

Geometric discrepancy: 0.0785

The information below is about HL_4V9F_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

1VQP|1|0|U|2586
1VQP|1|0|OMU|2587
1VQP|1|0|OMG|2588
1VQP|1|0|U|2589
1VQP|1|0|U|2590
1VQP|1|0|C|2591
1VQP|1|0|G|2592

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 4

5'-R(*(DC)P*(DC)P*(PPU)*(LOF)P*(PO2)P*AP*C*C)-3'

Chain B

50S ribosomal protein L3P