HL_1VVJ_008

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0859

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1VVJ|1|QA|C|320
1VVJ|1|QA|A|321
1VVJ|1|QA|C|322
1VVJ|1|QA|U|323
1VVJ|1|QA|G|324
1VVJ|1|QA|A|325
1VVJ|1|QA|G|326
1VVJ|1|QA|A|327
1VVJ|1|QA|C|328
1VVJ|1|QA|A|329
1VVJ|1|QA|C|330
1VVJ|1|QA|G|331
1VVJ|1|QA|G|332
1VVJ|1|QA|G|333

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16

Chain QT

30S ribosomal protein S20