HL_1VVJ_011

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

1VVJ|1|QA|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_011 not in the Motif Atlas

Homologous match to HL_5J7L_011

Geometric discrepancy: 0.2653

The information below is about HL_5J7L_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

1VVJ|1|QA|C|419
1VVJ|1|QA|U|420
1VVJ|1|QA|U|421
1VVJ|1|QA|C|422
1VVJ|1|QA|G|423
1VVJ|1|QA|G|424

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QD

30S ribosomal protein S4