HL_1VVJ_018

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

1VVJ|1|QA|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_018 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2107

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

1VVJ|1|QA|G|837
1VVJ|1|QA|G|838
1VVJ|1|QA|U|841
1VVJ|1|QA|C|842
1VVJ|1|QA|U|843
1VVJ|1|QA|C|848
1VVJ|1|QA|C|849

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QR

30S ribosomal protein S18