HL_1VVJ_032

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_032 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.124

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

1VVJ|1|QA|C|1515
1VVJ|1|QA|G|1516
1VVJ|1|QA|G|1517
1VVJ|1|QA|A|1518
1VVJ|1|QA|A|1519
1VVJ|1|QA|G|1520

Current chains

Chain QA

16S rRNA

Nearby chains

Chain RA

Large subunit ribosomal RNA; LSU rRNA