HL_1VVJ_035
3D structure
- PDB id
- 1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VVJ_035 not in the Motif Atlas
- Homologous match to HL_4TUE_035
- Geometric discrepancy: 0.1356
- The information below is about HL_4TUE_035
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
1VVJ|1|QV|G|53
1VVJ|1|QV|U|54
1VVJ|1|QV|U|55
1VVJ|1|QV|C|56
1VVJ|1|QV|A|57
1VVJ|1|QV|A|58
1VVJ|1|QV|A|59
1VVJ|1|QV|U|60
1VVJ|1|QV|C|61
Current chains
- Chain QV
- P-site tRNA fMet
Nearby chains
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
- Chain RG
- 50S ribosomal protein L5
- Chain RQ
- 50S ribosomal protein L16
Coloring options: