HL_1VVJ_039

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

1VVJ|1|RA|G|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_039 not in the Motif Atlas

Homologous match to HL_7RQB_003

Geometric discrepancy: 0.1394

The information below is about HL_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

1VVJ|1|RA|G|123
1VVJ|1|RA|G|124
1VVJ|1|RA|G|125
1VVJ|1|RA|A|126
1VVJ|1|RA|A|127
1VVJ|1|RA|C|128

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L35

Chain RX

50S ribosomal protein L23