HL_1VVJ_050

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

1VVJ|1|RA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_050 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.1102

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

1VVJ|1|RA|G|410
1VVJ|1|RA|G|411
1VVJ|1|RA|A|412
1VVJ|1|RA|C|413
1VVJ|1|RA|C|414
1VVJ|1|RA|A|415
1VVJ|1|RA|C|416
1VVJ|1|RA|C|417

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RP

50S ribosomal protein L15