HL_1VVJ_064

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_064 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.1197

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

1VVJ|1|RA|G|978
1VVJ|1|RA|G|979
1VVJ|1|RA|A|980
1VVJ|1|RA|A|981
1VVJ|1|RA|C|982
1VVJ|1|RA|A|983
1VVJ|1|RA|A|984
1VVJ|1|RA|C|985

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RU

50S ribosomal protein L20