HL_1VVJ_088

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

1VVJ|1|RA|C|2145, 1VVJ|1|RA|C|2146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_088 not in the Motif Atlas

Homologous match to HL_3U4M_001

Geometric discrepancy: 0.386

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

1VVJ|1|RA|C|2143
1VVJ|1|RA|U|2144
1VVJ|1|RA|C|2145
1VVJ|1|RA|C|2146
1VVJ|1|RA|G|2147
1VVJ|1|RA|G|2148

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QK

30S ribosomal protein S11