HL_1VVJ_103

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

1VVJ|1|RA|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_103 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1401

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

1VVJ|1|RA|C|2745
1VVJ|1|RA|U|2746
1VVJ|1|RA|G|2747
1VVJ|1|RA|A|2748
1VVJ|1|RA|A|2749
1VVJ|1|RA|A|2750
1VVJ|1|RA|G|2751
1VVJ|1|RA|C|2752
1VVJ|1|RA|A|2753
1VVJ|1|RA|U|2754
1VVJ|1|RA|C|2755
1VVJ|1|RA|U|2756
1VVJ|1|RA|A|2757
1VVJ|1|RA|A|2758
1VVJ|1|RA|G|2759

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13