HL_1VVJ_117

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

1VVJ|1|XA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_117 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.4852

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

1VVJ|1|XA|C|342
1VVJ|1|XA|U|343
1VVJ|1|XA|A|344
1VVJ|1|XA|C|345
1VVJ|1|XA|G|346
1VVJ|1|XA|G|347

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20

Chain YO

50S ribosomal protein L14

Chain YT

50S ribosomal protein L19