3D structure

PDB id
1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.44 Å

Loop

Sequence
CUACGG
Length
6 nucleotides
Bulged bases
1VVJ|1|XA|A|344
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1VVJ_117 not in the Motif Atlas
Homologous match to HL_6CZR_080
Geometric discrepancy: 0.4852
The information below is about HL_6CZR_080
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.4
Basepair signature
cWW-tSW-F
Number of instances in this motif group
58

Unit IDs

1VVJ|1|XA|C|342
1VVJ|1|XA|U|343
1VVJ|1|XA|A|344
1VVJ|1|XA|C|345
1VVJ|1|XA|G|346
1VVJ|1|XA|G|347

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XT
30S ribosomal protein S20
Chain YO
50S ribosomal protein L14
Chain YT
50S ribosomal protein L19

Coloring options:


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