HL_1VVJ_164

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_164 not in the Motif Atlas

Homologous match to HL_7RQB_020

Geometric discrepancy: 0.1209

The information below is about HL_7RQB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

1VVJ|1|YA|G|629
1VVJ|1|YA|G|630
1VVJ|1|YA|A|631
1VVJ|1|YA|A|632
1VVJ|1|YA|A|633
1VVJ|1|YA|C|634

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y8

tRNA acceptor end mimic

Chain YP

50S ribosomal protein L15