HL_1VVJ_169

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

1VVJ|1|YA|U|827, 1VVJ|1|YA|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_169 not in the Motif Atlas

Homologous match to HL_5J7L_157

Geometric discrepancy: 0.1876

The information below is about HL_5J7L_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

1VVJ|1|YA|U|826
1VVJ|1|YA|U|827
1VVJ|1|YA|U|828
1VVJ|1|YA|A|829
1VVJ|1|YA|G|830
1VVJ|1|YA|G|831

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YP

50S ribosomal protein L15