HL_1VVJ_182

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

1VVJ|1|YA|C|1493, 1VVJ|1|YA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_182 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.2331

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

1VVJ|1|YA|G|1492
1VVJ|1|YA|C|1493
1VVJ|1|YA|A|1494
1VVJ|1|YA|A|1495
1VVJ|1|YA|A|1496
1VVJ|1|YA|U|1497
1VVJ|1|YA|C|1498

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YD

50S ribosomal protein L2