HL_1VVJ_185

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

1VVJ|1|YA|A|1614, 1VVJ|1|YA|A|1616, 1VVJ|1|YA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_185 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0923

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

1VVJ|1|YA|C|1612
1VVJ|1|YA|G|1613
1VVJ|1|YA|A|1614
1VVJ|1|YA|C|1615
1VVJ|1|YA|A|1616
1VVJ|1|YA|C|1617
1VVJ|1|YA|A|1618
1VVJ|1|YA|G|1619

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y7

50S ribosomal protein L35

Chain YW

50S ribosomal protein L22