HL_1VVJ_205

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VVJ_205 not in the Motif Atlas

Homologous match to HL_7RQB_060

Geometric discrepancy: 0.1902

The information below is about HL_7RQB_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

1VVJ|1|YA|C|2471
1VVJ|1|YA|G|2472
1VVJ|1|YA|U|2473
1VVJ|1|YA|C|2474
1VVJ|1|YA|C|2475
1VVJ|1|YA|A|2476
1VVJ|1|YA|C|2477
1VVJ|1|YA|A|2478
1VVJ|1|YA|G|2479

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YQ

50S ribosomal protein L16