HL_1VX3_008

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUGCUUGGGAAUGCAGC

Length

18 nucleotides

Bulged bases

1VX3|1|5|G|294, 1VX3|1|5|A|295, 1VX3|1|5|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|285
1VX3|1|5|U|286
1VX3|1|5|U|287
1VX3|1|5|G|288
1VX3|1|5|C|289
1VX3|1|5|U|290
1VX3|1|5|U|291
1VX3|1|5|G|292
1VX3|1|5|G|293
1VX3|1|5|G|294
1VX3|1|5|A|295
1VX3|1|5|A|296
1VX3|1|5|U|297
1VX3|1|5|G|298
1VX3|1|5|C|299
1VX3|1|5|A|300
1VX3|1|5|G|301
1VX3|1|5|C|302

Current chains

Chain 5

28S ribosomal RNA

Nearby chains