HL_1VX3_028

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VX3_028 not in the Motif Atlas

Geometric match to HL_8P9A_140

Geometric discrepancy: 0.3091

The information below is about HL_8P9A_140

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1VX3|1|5|U|2006
1VX3|1|5|G|2007
1VX3|1|5|U|2008
1VX3|1|5|A|2009
1VX3|1|5|A|2010
1VX3|1|5|C|2011
1VX3|1|5|A|2012
1VX3|1|5|A|2013

Current chains

Chain 5

28S ribosomal RNA

Nearby chains