HL_1VX3_032

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

1VX3|1|5|G|2421, 1VX3|1|5|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VX3_032 not in the Motif Atlas

Geometric match to HL_5J7L_170

Geometric discrepancy: 0.2231

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

1VX3|1|5|A|2420
1VX3|1|5|G|2421
1VX3|1|5|C|2422
1VX3|1|5|A|2423
1VX3|1|5|G|2424
1VX3|1|5|U|2425
1VX3|1|5|U|2426

Current chains

Chain 5

28S ribosomal RNA

Nearby chains