HL_1VX3_033

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VX3_033 not in the Motif Atlas

Geometric match to HL_1U6B_004

Geometric discrepancy: 0.2973

The information below is about HL_1U6B_004

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

1VX3|1|5|C|2458
1VX3|1|5|G|2459
1VX3|1|5|A|2460
1VX3|1|5|G|2461
1VX3|1|5|C|2462
1VX3|1|5|G|2463

Current chains

Chain 5

28S ribosomal RNA

Nearby chains