HL_1VX3_043

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

1VX3|1|5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VX3_043 not in the Motif Atlas

Geometric match to HL_8P9A_153

Geometric discrepancy: 0.2256

The information below is about HL_8P9A_153

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

1VX3|1|5|U|2810
1VX3|1|5|G|2811
1VX3|1|5|A|2812
1VX3|1|5|A|2813
1VX3|1|5|C|2814
1VX3|1|5|A|2815
1VX3|1|5|G|2816

Current chains

Chain 5

28S ribosomal RNA

Nearby chains