HL_1VX3_050

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAAAUGCCUCGUCAUCUAAUUAGUGACGCG

Length

31 nucleotides

Bulged bases

1VX3|1|5|A|3785, 1VX3|1|5|C|3794, 1VX3|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|C|3781
1VX3|1|5|C|3782
1VX3|1|5|A|3783
1VX3|1|5|A|3784
1VX3|1|5|A|3785
1VX3|1|5|U|3786
1VX3|1|5|G|3787
1VX3|1|5|C|3788
1VX3|1|5|C|3789
1VX3|1|5|U|3790
1VX3|1|5|C|3791
1VX3|1|5|G|3792
1VX3|1|5|U|3793
1VX3|1|5|C|3794
1VX3|1|5|A|3795
1VX3|1|5|U|3796
1VX3|1|5|C|3797
1VX3|1|5|U|3798
1VX3|1|5|A|3799
1VX3|1|5|A|3800
1VX3|1|5|U|3801
1VX3|1|5|U|3802
1VX3|1|5|A|3803
1VX3|1|5|G|3804
1VX3|1|5|U|3805
1VX3|1|5|G|3806
1VX3|1|5|A|3807
1VX3|1|5|C|3808
1VX3|1|5|G|3809
1VX3|1|5|C|3810
1VX3|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains