HL_1VX3_051

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

1VX3|1|5|A|3876, 1VX3|1|5|A|3877, 1VX3|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VX3_051 not in the Motif Atlas

Geometric match to HL_8P9A_162

Geometric discrepancy: 0.2594

The information below is about HL_8P9A_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

1VX3|1|5|G|3873
1VX3|1|5|G|3874
1VX3|1|5|G|3875
1VX3|1|5|A|3876
1VX3|1|5|A|3877
1VX3|1|5|C|3878
1VX3|1|5|G|3879
1VX3|1|5|G|3880
1VX3|1|5|G|3881
1VX3|1|5|C|3882

Current chains

Chain 5

28S ribosomal RNA

Nearby chains