HL_1VX3_055

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

1VX3|1|5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VX3_055 not in the Motif Atlas

Geometric match to HL_8P9A_165

Geometric discrepancy: 0.3559

The information below is about HL_8P9A_165

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

1VX3|1|5|C|4193
1VX3|1|5|U|4194
1VX3|1|5|G|4195
1VX3|1|5|G|4196
1VX3|1|5|G|4197
1VX3|1|5|G|4198
1VX3|1|5|C|4199
1VX3|1|5|G|4200
1VX3|1|5|G|4201

Current chains

Chain 5

28S ribosomal RNA

Nearby chains