HL_1VX3_060

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACCUUUUGGGUUUUAAGC

Length

19 nucleotides

Bulged bases

1VX3|1|5|C|4349, 1VX3|1|5|U|4354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|4347
1VX3|1|5|A|4348
1VX3|1|5|C|4349
1VX3|1|5|C|4350
1VX3|1|5|U|4351
1VX3|1|5|U|4352
1VX3|1|5|U|4353
1VX3|1|5|U|4354
1VX3|1|5|G|4355
1VX3|1|5|G|4356
1VX3|1|5|G|4357
1VX3|1|5|U|4358
1VX3|1|5|U|4359
1VX3|1|5|U|4360
1VX3|1|5|U|4361
1VX3|1|5|A|4362
1VX3|1|5|A|4363
1VX3|1|5|G|4364
1VX3|1|5|C|4365

Current chains

Chain 5

28S ribosomal RNA

Nearby chains