HL_1VX3_061

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAAGCGUUCAUAGCGACG

Length

19 nucleotides

Bulged bases

1VX3|1|5|U|4419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|C|4412
1VX3|1|5|C|4413
1VX3|1|5|A|4414
1VX3|1|5|A|4415
1VX3|1|5|G|4416
1VX3|1|5|C|4417
1VX3|1|5|G|4418
1VX3|1|5|U|4419
1VX3|1|5|U|4420
1VX3|1|5|C|4421
1VX3|1|5|A|4422
1VX3|1|5|U|4423
1VX3|1|5|A|4424
1VX3|1|5|G|4425
1VX3|1|5|C|4426
1VX3|1|5|G|4427
1VX3|1|5|A|4428
1VX3|1|5|C|4429
1VX3|1|5|G|4430

Current chains

Chain 5

28S ribosomal RNA

Nearby chains