HL_1VX3_067

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACUGAACGCCUCUAAGUC

Length

19 nucleotides

Bulged bases

1VX3|1|5|G|4694

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|4686
1VX3|1|5|A|4687
1VX3|1|5|C|4688
1VX3|1|5|U|4689
1VX3|1|5|G|4690
1VX3|1|5|A|4691
1VX3|1|5|A|4692
1VX3|1|5|C|4693
1VX3|1|5|G|4694
1VX3|1|5|C|4695
1VX3|1|5|C|4696
1VX3|1|5|U|4697
1VX3|1|5|C|4698
1VX3|1|5|U|4699
1VX3|1|5|A|4700
1VX3|1|5|A|4701
1VX3|1|5|G|4702
1VX3|1|5|U|4703
1VX3|1|5|C|4704

Current chains

Chain 5

28S ribosomal RNA

Nearby chains