HL_1VX3_073

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGCUAGCUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VX3_073 not in the Motif Atlas

Geometric match to HL_8CRE_074

Geometric discrepancy: 0.2092

The information below is about HL_8CRE_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93438.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

1VX3|1|8|C|47
1VX3|1|8|A|48
1VX3|1|8|G|49
1VX3|1|8|C|50
1VX3|1|8|U|51
1VX3|1|8|A|52
1VX3|1|8|G|53
1VX3|1|8|C|54
1VX3|1|8|U|55
1VX3|1|8|G|56

Current chains

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA