HL_1VX3_079

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCGGACUGUCCCCAGUGCGC

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|1171
1VX3|1|5|C|1172
1VX3|1|5|G|1173
1VX3|1|5|G|1174
1VX3|1|5|A|1175
1VX3|1|5|C|1176
1VX3|1|5|U|1177
1VX3|1|5|G|1178
1VX3|1|5|U|1179
1VX3|1|5|C|1180
1VX3|1|5|C|1181
1VX3|1|5|C|1182
1VX3|1|5|C|1183
1VX3|1|5|A|1184
1VX3|1|5|G|1185
1VX3|1|5|U|1186
1VX3|1|5|G|1187
1VX3|1|5|C|1188
1VX3|1|5|G|1189
1VX3|1|5|C|1190

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA