HL_1VX3_084

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAAUGUCAAAGUGAAGAAAUUCAAUGAAGCGCG

Length

35 nucleotides

Bulged bases

1VX3|1|5|U|3709, 1VX3|1|5|A|3712, 1VX3|1|5|U|3713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|C|3708
1VX3|1|5|U|3709
1VX3|1|5|G|3710
1VX3|1|5|A|3711
1VX3|1|5|A|3712
1VX3|1|5|U|3713
1VX3|1|5|G|3714
1VX3|1|5|U|3715
1VX3|1|5|C|3716
1VX3|1|5|A|3717
1VX3|1|5|A|3718
1VX3|1|5|A|3719
1VX3|1|5|G|3720
1VX3|1|5|U|3721
1VX3|1|5|G|3722
1VX3|1|5|A|3723
1VX3|1|5|A|3724
1VX3|1|5|G|3725
1VX3|1|5|A|3726
1VX3|1|5|A|3727
1VX3|1|5|A|3728
1VX3|1|5|U|3729
1VX3|1|5|U|3730
1VX3|1|5|C|3731
1VX3|1|5|A|3732
1VX3|1|5|A|3733
1VX3|1|5|U|3734
1VX3|1|5|G|3735
1VX3|1|5|A|3736
1VX3|1|5|A|3737
1VX3|1|5|G|3738
1VX3|1|5|C|3739
1VX3|1|5|G|3740
1VX3|1|5|C|3741
1VX3|1|5|G|3742

Current chains

Chain 5

28S ribosomal RNA

Nearby chains