HL_1VY4_090

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

1VY4|1|BA|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY4_090 not in the Motif Atlas

Homologous match to HL_3U4M_001

Geometric discrepancy: 0.2476

The information below is about HL_3U4M_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

1VY4|1|BA|C|2143
1VY4|1|BA|U|2144
1VY4|1|BA|C|2145
1VY4|1|BA|C|2146
1VY4|1|BA|G|2147
1VY4|1|BA|G|2148

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AK

30S ribosomal protein S11