HL_1VY4_099

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY4_099 not in the Motif Atlas

Homologous match to HL_7RQB_060

Geometric discrepancy: 0.0794

The information below is about HL_7RQB_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

1VY4|1|BA|C|2471
1VY4|1|BA|G|2472
1VY4|1|BA|U|2473
1VY4|1|BA|C|2474
1VY4|1|BA|C|2475
1VY4|1|BA|A|2476
1VY4|1|BA|C|2477
1VY4|1|BA|A|2478
1VY4|1|BA|G|2479

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6