HL_1VY4_118

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY4_118 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0849

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1VY4|1|CA|C|320
1VY4|1|CA|A|321
1VY4|1|CA|C|322
1VY4|1|CA|U|323
1VY4|1|CA|G|324
1VY4|1|CA|A|325
1VY4|1|CA|G|326
1VY4|1|CA|A|327
1VY4|1|CA|C|328
1VY4|1|CA|A|329
1VY4|1|CA|C|330
1VY4|1|CA|G|331
1VY4|1|CA|G|332
1VY4|1|CA|G|333

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CT

30S ribosomal protein S20