3D structure

PDB id
1VY4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CUAACG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1VY4_129 not in the Motif Atlas
Homologous match to HL_4LFB_019
Geometric discrepancy: 0.0993
The information below is about HL_4LFB_019
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

1VY4|1|CA|C|862
1VY4|1|CA|U|863
1VY4|1|CA|A|864
1VY4|1|CA|A|865
1VY4|1|CA|C|866
1VY4|1|CA|G|867

Current chains

Chain CA
16S Ribosomal RNA

Nearby chains

Chain CE
30S ribosomal protein S5
Chain CH
30S ribosomal protein S8

Coloring options:


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