HL_1VY4_142

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAGGGAG

Length

7 nucleotides

Bulged bases

1VY4|1|CW|G|18, 1VY4|1|CW|G|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY4_142 not in the Motif Atlas

Homologous match to HL_3WFS_001

Geometric discrepancy: 0.2699

The information below is about HL_3WFS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VY4|1|CW|C|13
1VY4|1|CW|A|14
1VY4|1|CW|G|15
1VY4|1|CW|G|18
1VY4|1|CW|G|19
1VY4|1|CW|A|21
1VY4|1|CW|G|22

Current chains

Chain CW

A-site tRNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA