HL_1VY4_176

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

1VY4|1|DA|U|827, 1VY4|1|DA|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY4_176 not in the Motif Atlas

Homologous match to HL_4WF9_025

Geometric discrepancy: 0.0957

The information below is about HL_4WF9_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

1VY4|1|DA|U|826
1VY4|1|DA|U|827
1VY4|1|DA|U|828
1VY4|1|DA|A|829
1VY4|1|DA|G|830
1VY4|1|DA|G|831

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DP

50S ribosomal protein L15