HL_1VY4_179

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY4_179 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.0737

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

1VY4|1|DA|G|978
1VY4|1|DA|G|979
1VY4|1|DA|A|980
1VY4|1|DA|A|981
1VY4|1|DA|C|982
1VY4|1|DA|A|983
1VY4|1|DA|A|984
1VY4|1|DA|C|985

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L30

Chain DU

50S ribosomal protein L20