HL_1VY4_184

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

1VY4|1|DA|U|1396, 1VY4|1|DA|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY4_184 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0674

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1VY4|1|DA|G|1389
1VY4|1|DA|U|1390
1VY4|1|DA|U|1391
1VY4|1|DA|A|1392
1VY4|1|DA|A|1393
1VY4|1|DA|U|1394
1VY4|1|DA|A|1395
1VY4|1|DA|U|1396
1VY4|1|DA|U|1397
1VY4|1|DA|C|1398

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DX

50S ribosomal protein L23