HL_1VY4_204

3D structure

PDB id

1VY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VY4_204 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.1523

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

1VY4|1|DA|G|2303
1VY4|1|DA|G|2304
1VY4|1|DA|A|2305
1VY4|1|DA|C|2306
1VY4|1|DA|G|2307
1VY4|1|DA|G|2308
1VY4|1|DA|A|2309
1VY4|1|DA|A|2310
1VY4|1|DA|A|2311
1VY4|1|DA|U|2312
1VY4|1|DA|C|2313

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S ribosomal protein L5